Introduction to Proteome Wide Analysis

What is/are Proteome Wide Analysis?

Proteome Wide Analysis - The method allows significant reduction of the proteome-wide analysis time to a few minutes at the depth of quantitative proteome coverage of 1000 proteins at 1% false discovery rate (FDR). ^[1] To identify EDEM2-associated proteins, we used affinity proteomics and proteome-wide analysis of sucrose density fractionation in an integrative workflow. ^[2] Moreover, proteome-wide analysis of intracellular sumoylation demonstrates that esc2-D430R specifically down-regulates sumoylation levels of Mms21-preferred targets, including the nucleolar proteins, components of the SMC complexes and the MCM complex that acts as the catalytic core of the replicative DNA helicase. ^[3] Objectives In this study, we performed a longitudinal and proteome-wide analysis of antibodies in the COVID-19 patients to revealed some immune processes of COVID-19 patients against SARS-CoV-2 and found some dominant epitopes of a potential vaccine. ^[4] The proteome-wide analysis displayed no proteins with diabetes-heparin interaction to pass correction for multiple testing. ^[5] With the development of mass spectrometry (MS) based proteomics technologies, patient derived xenograft (PDX), which is generated from the primary tumor of a patient, is widely used for the proteome-wide analysis of cancer mechanism and biomarker identification of a drug. ^[6] These methods do not exclusively cover the analytics of SEPs but simultaneously include the low molecular weight proteome and, moreover, can also be used for the proteome-wide analysis of proteolytic processing events. ^[7] Results from this analysis motivate future efforts to conduct comprehensive proteome-wide analysis of redox-sensitivity, conservation, and local structural environments of proteins containing reactive cysteine residues. ^[8] One of the interesting outcomes of the proteome-wide analysis of protein-protein interactions in yeast is the finding that Sch-9 associates with Shp1, Cdc48, and Ufd1, which form a complex responsible for the recognition and targeting of ubiquitinated proteins to the proteasome for degradation. ^[9] A proteome-wide analysis of PROTAC-FCPF-mediated Cas9FCPF protein degradation revealed a high target specificity, suggesting a wide range of applications of perfluoroaromatics-induced proximity in the regulation of stability, activity, and functionality of any FCPF-tagging protein. ^[10] Therefore, we conducted a proteome-wide analysis of protein sequences of 689 fungal species (7. ^[11] STUDY DESIGN, SIZE, DURATION Proteome-wide analysis of distal tubal lavage specimens collected from 26 healthy women undergoing open microtubal anastomosis surgery from January 2013 to January 2018 was performed. ^[12] Proteome-wide analysis was done. ^[13] Further, a proteome-wide analysis and fluorescence reporter-based analysis revealed that upregulated factors following the activation of the metabolic sink are strongly concentrated on ribulose-1,5-bisphosphate carboxylase-oxygenase (Rubisco) and axillary modules involved in Rubisco maturation. ^[14] Here, we extend these studies by performing a proteome-wide analysis of covalent targets of BIA 10-2474 metabolites. ^[15] In this review, we highlight recent advances in chemoproteomics for targeted and proteome-wide analysis of metabolite-protein interactions that have enabled the discovery of unpredicted metabolite-protein interactions and facilitated the development of new small molecule therapeutics. ^[16] ResultsA proteome-wide analysis of plant proteomes from 145 species revealed a pI range of 1. ^[17] Overall, heteroaromatic sulfones provide modular tunability, shifted chromatographic elution times, and superior in-cell cysteine profiling for in-depth proteome-wide analysis and covalent ligand discovery. ^[18] HIGHLIGHTS Proteome-wide analysis of Exonuclease-1 (EXO1) interacting proteins revealed novel partners involved in RNA processing or that are the causative agents of rare X-linked disorders. ^[19] Here is described the first lytic proteome-wide analysis of CD8+T cell responses to EBV and the first to compare primary vs memory CD8+T cell responses to any human herpesvirus. ^[20] The study aim was to compare molecular-level effects (blood-dialyzer interactions) of heparin and citrate anticoagulation using proteome-wide analysis of biofilm adsorbed to dialysis membrane. ^[21] Our methodology is applicable for proteome-wide analysis of autoantibody targets in a wide variety of clinical settings. ^[22] The proteome-wide analysis of persulfidation is of great importance; therefore, this study combines filter-aided sample preparation with an iodoacetic acid functionalized polyamidoamine dendrimer to enrich persulfidated peptides (denoted as filter-aided dendrimer enrichment strategy, FADE). ^[23] As an example of a typical application, we describe here the proteome-wide analysis of the immune response to a bacterial infectious agent by characterizing the binding profiles of the antibodies in patient sera. ^[24] To confirm this hypothesis we have now taken advantage of recent advances in mass spectrometry that have enabled the proteome-wide analysis of protein concentrations in both the soluble and insoluble forms. ^[25] Proteome-wide analysis and CXCL4 as a biomarker in systemic sclerosis. ^[26] Results A proteome-wide analysis of plant proteomes from 145 species revealed a pI range of 1. ^[27] This conclusion is supported by a proteome-wide analysis that indicates that lysosomal proteins have higher melting temperatures but also higher turnover rates than proteins of other organelles. ^[28]